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allen mouse brain connectome atlas  (Allen Institute for Brain Science)

 
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    Allen Institute for Brain Science allen mouse brain connectome atlas
    Allen Mouse Brain Connectome Atlas, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/allen+mouse+brain+atlas/allen+mouse+brain+connectivity+atlas/pm40396482-99-38-23
    Average 90 stars, based on 1 article reviews
    allen mouse brain connectome atlas - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    Magnetic Resonance Imaging:

    Article Title: Noninvasive Imaging of Transgene Expression in Neurons Using Chemical Exchange Saturation Transfer MRI.
    Article Snippet: Segmentation of region- of- interest (ROI) of AAV- injected and control striatum was performed manually by a single operator using the reference CEST image acquired without saturation. .. The position of each histological slice and anatomical MRI acquisition within the Allen mouse Brain Atlas (ABA) common coordinates framework (© 2015 Allen Institute for Brain Science. ..

    other:

    Article Title: Wir gestalten Zukunft
    Article Snippet: s des Deutschen Schmerzkongresses 2024: 16.–19.. Oktober 2024 im CC Rosengarten, Mannheim Abstracts/Kongresse Der Schmerz

    Injection:

    Article Title: Brainwide Projections of Mouse Dopaminergic Zona Incerta Neurons.
    Article Snippet: .. Correlation of fiber coverage (in pixels) between injection Case 1 and Case 7 across major brain divisions (see Supporting Information Figure 1) as defined by the Allen Mouse Brain Atlas (Wang et al. 2020a; Allen Institute for Brain Science 2011; a). ..

    Gene Expression:

    Article Title: Comprehensive chemoanatomical mapping, and the gonadal regulation, of seven kisspeptin neuronal populations in the mouse brain
    Article Snippet: Sagittal and coronal quasi‐serial sections (1 in 4 for SISH and 1 in 7 for DISH, see Figure ) were first examined using a Nikon Eclipse E600 microscope, along with its digital camera for photographic documentation. .. Low‐magnification examination was conducted to localize anatomical structures, referencing Paxinos and Franklin's The Mouse Brain in Stereotaxic Coordinates, in conjunction with the Allen Mouse Brain Atlas ( https://mouse.brain-map.org/ , Allen Institute for Brain Science), specifically consulting the Slc32a1 , Slc17a6 , Tac2 , Pdyn , Esr1 , and Ar gene expression data. .. Once a Kiss1 ‐expressing brain structure was identified, we counted the cells co‐expressing channel‐1 ( Kiss1 ) and one of the six channel‐2 probes, relative to the total channel‐1‐expressing cells in Nissl‐labeled nuclei within on‐screen micrographs taken at 40× magnification (Nikon Eclipse E600 microscope), within an identified anatomical structure.



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    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
    Allen Mouse Brain Atlas, supplied by Human Protein Atlas, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    allen mouse brain connectome atlas  (Allen Institute for Brain Science)
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    Allen Institute for Brain Science allen mouse brain connectome atlas
    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
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    allen reference atlas – mouse brain  (Allen Institute for Brain Science)
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    Allen Institute for Brain Science allen reference atlas – mouse brain
    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
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    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
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    allen mouse brain atlas  (Allen Institute for Brain Science)
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    Allen Institute for Brain Science allen mouse brain atlas
    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
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    allen mouse brain reference atlas 8 2004  (Allen Institute for Brain Science)
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    Allen Institute for Brain Science allen mouse brain reference atlas 8 2004
    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different <t>brain</t> regions in six different datasets available from the Human Protein <t>Atlas:</t> HPA (Human), FANTOM, GTEx, HPA (Pig), HPA <t>(Mouse),</t> and <t>Allen</t> Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .
    Allen Mouse Brain Reference Atlas 8 2004, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    Image Search Results


    A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different brain regions in six different datasets available from the Human Protein Atlas: HPA (Human), FANTOM, GTEx, HPA (Pig), HPA (Mouse), and Allen Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .

    Journal: Communications Biology

    Article Title: Integrative analysis of 115 transcriptomic studies decodes the molecular landscape of neurodevelopmental disorders

    doi: 10.1038/s42003-025-08330-2

    Figure Lengend Snippet: A Circular heatmap of the distribution of the eight neurological phenotypes across the 151 NDD datasets. B The signed -log 10 P value of the Cerebellar Purkinje cell layer formation GO-BP term across the different datasets. A negative and positive signed -log 10 P value were calculated through Gene Set Enrichment Analysis (GSEA) and indicates down- and upregulated expression, respectively. C log 2 odds ratio (OR) of differential expression in seizure- versus non-seizure-associated neurodevelopmental disorders for all genes associated with cerebellar Purkinje cell layer formation. LHX1 has the highest OR. The lines indicate different types of protein-protein and gene-gene relationships from GeneMANIA (version 3.5.3). D log 2 FC profile and their 95% confidence interval of the LHX1 gene in seizure- and non-seizure-associated neurodevelopmental disorders. E LHX1 expression levels across different brain regions in six different datasets available from the Human Protein Atlas: HPA (Human), FANTOM, GTEx, HPA (Pig), HPA (Mouse), and Allen Mouse Brain Atlas. The Z-score was calculated for each dataset separately. F UMAP plot of the cerebellar vermis scRNA-seq data from the Human Brain Atlas v1.0. The LHX1 expression in the different superclusters is shown. Specifically, 51 and 28% of the cerebellar inhibitory and upper rhombic lip cells, respectively, express LHX1 .

    Article Snippet: The brain region-specificity of genes of interest was assessed using the six available brain RNA expression datasets from the Human Protein Atlas (version 24.0): HPA (Human), FANTOM, GTEx, HPA (Pig), HPA (Mouse), and Allen Mouse Brain Atlas.

    Techniques: Expressing, Quantitative Proteomics